filter-sequences
CommunityStreamline sequence filtering for research with Biopython.
Authorpradyumnasagar
Version1.0.0
Installs0
System Documentation
What problem does it solve?
This Skill simplifies the process of filtering biological sequences based on various criteria, streamlining the workflow for researchers dealing with large datasets.
Core Features & Use Cases
- Multiple Filtering Options: Offers length, identity, regex, GC content, complexity, and custom predicate filtering.
- Fast Streaming: Utilizes Biopython and SeqIO for efficient streaming of data, minimizing memory usage.
- Use Case: For a researcher working with genomic sequences, this Skill can quickly filter out sequences based on length and complexity, improving the efficiency of downstream analysis.
Quick Start
Run the filter-sequences skill to process your sequences with a custom set of filters, e.g., 'filter-sequences -l 1000 -c 1.8 -g 0.5 -n 0.05'.
Dependency Matrix
Required Modules
biopythonregex
Components
scripts
💻 Claude Code Installation
Recommended: Let Claude install automatically. Simply copy and paste the text below to Claude Code.
Please help me install this Skill: Name: filter-sequences Download link: https://github.com/pradyumnasagar/open-research-skills/archive/main.zip#filter-sequences Please download this .zip file, extract it, and install it in the .claude/skills/ directory.
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