diff-visualizer
CommunityVisualize RNA-seq and scRNA differential expression results with ease.
AuthorMubasherMohammed
Version1.0.0
Installs0
System Documentation
What problem does it solve?
This Skill simplifies the process of visualizing RNA-seq and single-cell RNA-seq differential expression results, enabling users to quickly generate publication-quality figures and reports.
Core Features & Use Cases
- Bulk RNA Visualization: Generate volcano plots, MA plots, top-gene bars, and heatmaps for bulk RNA-seq differential expression.
- scRNA Visualization: Create dataset-level contrast volcanoes, within-cluster comparison panels, marker ranking bars, and AnnData-based enhancement plots for single-cell RNA-seq.
- Reporting: Automatically generate HTML/Markdown reports, including
report.md,report.html,result.json, and reproducibility files. - Use Case: Suppose you have completed a bulk RNA-seq analysis and want to visualize the results. You can use this Skill to automatically generate a comprehensive report with all relevant figures and tables.
Quick Start
Run the diff-visualizer skill with the input file 'de_results.csv' and output the report to 'output_report'.
Dependency Matrix
Required Modules
pandasnumpymatplotlibanndatascanpypypdfpdfplumberpdf2image
Components
scriptsreferences
💻 Claude Code Installation
Recommended: Let Claude install automatically. Simply copy and paste the text below to Claude Code.
Please help me install this Skill: Name: diff-visualizer Download link: https://github.com/MubasherMohammed/opencode-BioInfo/archive/main.zip#diff-visualizer Please download this .zip file, extract it, and install it in the .claude/skills/ directory.
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