dismech-compliance

Analyze disorder YAML files for ontology bindings, evidence, and descriptions.

50|9|Updated Dec 4, 2025
One-click install
npx skills add https://github.com/monarch-initiative/dismech --skill dismech-compliance
Or copy as Structured Prompt for Agent
Please help me install this Agent Skill.
Skill: dismech-compliance
Source: https://github.com/monarch-initiative/dismech/tree/main/.claude/skills/dismech-compliance
Command: npx skills add https://github.com/monarch-initiative/dismech --skill dismech-compliance

SYSTEM DOCUMENTATION & REQUIREMENTS

What problem does it solve?

This skill helps data stewards and researchers ensure that the dismech disorder YAML files are complete, consistently bound to the right ontologies, and backed by evidence, enabling reliable downstream analyses.

Core Features & Use Cases

  • Validate YAML structure and required fields (disease_term, phenotypes, pathophysiology, treatments)
  • Compute and report on global and weighted compliance, with per-file profiling
  • Generate dashboards and targeted recommendations to guide curation workflows
  • Integrate with other skills to fetch ontology terms and evidence for rapid remediation

Quick Start

Run a compliance check on a single disorder file and review the resulting report.

Frequently Asked Questions about dismech-compliance

High-intent search queries and answers about installing and using this skill.

FAQPage Schema
How do I validate ontology bindings and evidence in disorder YAML files?

YAML compliance validation checks disorder files for required fields like disease_term and phenotypes, verifying ontology term existence, evidence presence, and qc_config.yaml compatibility to ensure reliable downstream analyses.

What is weighted compliance scoring for YAML knowledge-base files?

Weighted compliance scoring for YAML knowledge-base files evaluates individual disorder files and full repositories, computing global compliance metrics with per-file profiling to quantify completeness against ontology bindings and evidence requirements.

Can I run a full-repository compliance check across multiple disorder YAML files?

Yes, full-repository compliance checks analyze multiple disorder YAML files simultaneously, validating structure, ontology bindings, and evidence while generating global weighted scores and per-file profiling for curation workflows.

Does the validator check compatibility with qc_config.yaml rules?

Yes, the validator checks compatibility with qc_config.yaml rules, ensuring disorder YAML files align with configured quality control standards for ontology terms, evidence presence, and required structural fields.

What's the best way to generate compliance reports for disorder YAML curation?

The best way to generate compliance reports for disorder YAML curation is to run validation checks that produce dashboards and targeted recommendations, profiling each file's weighted score to guide remediation workflows.

Why does my disorder YAML file fail ontology validation checks?

Disorder YAML files fail ontology validation checks when missing required fields like disease_term, phenotypes, pathophysiology, or treatments, or when ontology term existence and evidence presence do not meet compliance standards.