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dnanexus-integration

Manage genomics workflows on the DNAnexus cloud platform via the dxpy SDK.

1|Updated Mar 12, 2026
Search Tags:#workflow#data management#bioinformatics#genomics#cloud computing#dxpy#dnanexus
One-click install
npx skills add https://github.com/yf8578/clawomics --skill dnanexus-integration-yf8578
Or copy as Structured Prompt for Agent▼
Please help me install this Agent Skill.
Skill: dnanexus-integration
Source: https://github.com/yf8578/clawomics/tree/main/skills/dnanexus-integration
Command: npx skills add https://github.com/yf8578/clawomics --skill dnanexus-integration-yf8578

SYSTEM DOCUMENTATION & REQUIREMENTS

💡 This Skill includes references (resource) components.

What problem does it solve?

This Skill provides comprehensive control over the DNAnexus cloud platform, enabling users to develop, deploy, and manage complex genomics analyses and data pipelines efficiently.

Core Features & Use Cases

  • App Development: Build and deploy custom bioinformatics applications and applets.
  • Data Management: Upload, download, search, and organize large-scale genomics datasets.
  • Workflow Orchestration: Run and monitor complex multi-step analysis pipelines.
  • SDK Utilization: Leverage the dxpy Python SDK for programmatic control and automation.
  • Use Case: A researcher needs to run a variant calling pipeline on thousands of FASTQ files stored on DNAnexus. They can use this Skill to develop a custom applet, upload their data, configure the pipeline, and launch the analysis jobs, monitoring their progress through the platform.

Quick Start

Use the dnanexus-integration skill to upload the local file '/path/to/my_data.fastq' to your DNAnexus project 'project-xxxx'.

Frequently Asked Questions about dnanexus-integration

High-intent search queries and answers about installing and using this skill.

FAQPage Schema
How do I run genomics workflows on the DNAnexus cloud platform?▼

You can run genomics workflows on the DNAnexus cloud platform by using this Skill to develop custom bioinformatics applets, configure multi-step pipelines, and launch automated analysis jobs programmatically through the dxpy SDK.

Can I automate uploading and managing large-scale genomic datasets using dxpy?▼

Yes, you can automate uploading and managing large-scale genomic datasets using dxpy. This Skill facilitates comprehensive data operations including uploading local FASTQ files, searching records, and organizing data within your DNAnexus projects.

What is the best way to build and deploy custom bioinformatics applications on DNAnexus?▼

The best way to build and deploy custom bioinformatics applications on DNAnexus is by leveraging this Skill to develop executable applets and orchestrate complex multi-step analysis pipelines using the dxpy Python SDK for programmatic control.

How do I monitor job execution for variant calling pipelines processing thousands of FASTQ files?▼

To monitor job execution for variant calling pipelines processing thousands of FASTQ files, this Skill provides workflow orchestration features that track and monitor complex multi-step analysis jobs launched on the DNAnexus cloud platform.

Does this approach require Python programming knowledge to manage cloud-based bioinformatics pipelines?▼

Yes, managing cloud-based bioinformatics pipelines requires Python programming knowledge, as the Skill utilizes the dxpy Python SDK for programmatic control, app development, and automating data operations on the DNAnexus platform.

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