drug-discovery

Aggregate cheminformatics data from public APIs to evaluate drug-likeness, ADMET, and safety signals.

Updated Apr 23, 2026
One-click install
npx skills add https://github.com/Chris-Chai-Minjae/hermes-agent-r1-bridge --skill drug-discovery-chris-chai-minjae
Or copy as Structured Prompt for Agent
Please help me install this Agent Skill.
Skill: drug-discovery
Source: https://github.com/Chris-Chai-Minjae/hermes-agent-r1-bridge/tree/main/optional-skills/research/drug-discovery
Command: npx skills add https://github.com/Chris-Chai-Minjae/hermes-agent-r1-bridge --skill drug-discovery-chris-chai-minjae

SYSTEM DOCUMENTATION & REQUIREMENTS

💡 This Skill includes scripts (resource) and references (resource) components.

What problem does it solve?

Pharmaceutical research often requires integrating data from multiple public sources to evaluate drug-likeness, ADMET, and safety signals for candidate molecules. This skill provides an automated, reference-backed workflow to query public databases, compute key properties, and summarize actionable insights for medicinal chemists.

Core Features & Use Cases

  • Bioactive compound search on ChEMBL to identify targets and activities.
  • Drug-likeness assessment including Ro5, Veber, QED, TPSA, and synthetic accessibility.
  • Drug interaction and safety lookups via OpenFDA and PubChem, OpenTargets cross-references, and ADMET interpretation.
  • Lead optimization support through property triage, scaffold ideas, and data-driven trade-offs for medicinal chemistry tasks.

Quick Start

Analyse a molecule such as aspirin or CHEMBL25 for drug-likeness and ADMET properties.

Frequently Asked Questions about drug-discovery

High-intent search queries and answers about installing and using this skill.

FAQPage Schema
How do I evaluate drug-likeness and ADMET properties for a candidate molecule?

To evaluate drug-likeness and ADMET properties, you can retrieve molecular data from public APIs like ChEMBL and PubChem, then compute Ro5, Veber, TPSA, and synthetic accessibility to summarize safety signals for lead optimization.

What is the best way to assess lead optimization trade-offs in medicinal chemistry?

Assessing lead optimization trade-offs involves aggregating cheminformatics data to triage molecular properties, evaluate drug-likeness metrics like QED, and summarize safety signals for data-driven scaffold decisions in medicinal chemistry workflows.

Can I query ChEMBL and PubChem to identify bioactive compounds and drug interactions?

Yes, you can query ChEMBL to identify bioactive compounds and their targets, while using PubChem and OpenFDA to look up drug interactions and cross-reference safety signals for candidate molecules.

Does this drug discovery workflow require external Python dependencies?

The drug discovery workflow operates using built-in Python and curl scripts to programmatically retrieve cheminformatics data from public databases, requiring no external dependencies to compute properties like MW, LogP, and HBD/HBA.

When do I need to compute Veber rules and TPSA for molecular candidates?

Computing Veber rules and TPSA is needed during drug-likeness assessment to evaluate oral bioavailability and permeability, helping identify viable lead compounds by filtering out molecules with poor absorption characteristics.

What are the limitations of using public APIs for pharmacology data retrieval?

Limitations of using public APIs for pharmacology data retrieval include dependency on external database uptime and potential gaps in ADMET or OpenTargets coverage, requiring manual interpretation of summarized safety signals.