drug-discovery

Automate pharmaceutical data gathering and analysis for drug discovery workflows.

Updated Apr 24, 2026
One-click install
npx skills add https://github.com/Harries/hermes-agent --skill drug-discovery-harries
Or copy as Structured Prompt for Agent
Please help me install this Agent Skill.
Skill: drug-discovery
Source: https://github.com/Harries/hermes-agent/tree/main/optional-skills/research/drug-discovery
Command: npx skills add https://github.com/Harries/hermes-agent --skill drug-discovery-harries

SYSTEM DOCUMENTATION & REQUIREMENTS

💡 This Skill includes scripts (resource) and references (resource) components.

What problem does it solve?

This skill automates the collection, interpretation, and integration of publicly available drug discovery data to accelerate medicinal chemistry workflows, reducing manual literature searches and data wrangling.

Core Features & Use Cases

  • Target search & bioactivity retrieval: find relevant bioactivity data for targets using ChEMBL, and summarize top hits.
  • Molecule property lookups: fetch descriptors (MW, LogP, TPSA, HBD/HBA) from PubChem for quick SAR assessment.
  • Clinical & literature context: pull disease associations and OpenTargets links to connect targets with diseases.
  • Lead optimization support: compare compounds and provide high-level feasibility notes for SAR hypotheses.

Quick Start

Query ChEMBL for a target and list top active compounds.

Frequently Asked Questions about drug-discovery

High-intent search queries and answers about installing and using this skill.

FAQPage Schema
How do I retrieve bioactivity data from ChEMBL for a specific drug target?

To retrieve ChEMBL bioactivity data, query a specific drug target to automatically fetch and summarize top active compounds. This streamlines early target identification and lead optimization workflows by reducing manual literature searches.

Can I look up molecule properties like LogP and TPSA using PubChem?

You can look up molecule properties like LogP and TPSA using PubChem. The process fetches chemical descriptors including molecular weight, TPSA, and HBD/HBA counts to support quick structure-activity relationship assessment.

How do I connect disease associations with drug targets using OpenTargets?

Connecting disease associations with drug targets uses OpenTargets to pull clinical and literature context. This links queried targets to relevant diseases, providing contextual data for early stage pharmaceutical research workflows.

Do I need API authentication to access OpenFDA and PubChem for drug discovery data?

No API authentication is needed to access OpenFDA and PubChem for drug discovery data gathering. The process uses public APIs with built-in safe fallbacks, allowing immediate automated retrieval of chemical and clinical information.

What is the best way to compare compounds during lead optimization?

The best way to compare compounds during lead optimization is to fetch their molecular descriptors and bioactivity profiles. This provides high-level feasibility notes for structure-activity relationship hypotheses without manual data wrangling.

Are there limitations when pulling pharmacology data from public APIs?

Limitations when pulling pharmacology data from public APIs include potential query failures or missing fields, which are handled by safe fallbacks. It is designed for public data integration, not proprietary or internal database querying.