embl-ebi-ols

Official

Navigate biomedical ontologies with OLS

Authorgoogle-deepmind
Version1.0.0
Installs0

System Documentation

What problem does it solve?

This Skill helps you resolve biomedical ontology terms by searching, retrieving definitions, and exploring hierarchical relationships across many public ontologies.

Core Features & Use Cases

  • Term search and autocomplete: Find ontology entries by keyword (and suggest likely completions for partial names), optionally constrained to a specific ontology.
  • Deep term retrieval: Pull detailed term metadata including definitions, synonyms, status, subsets, and graph-based structure.
  • Hierarchy navigation: Retrieve parents, children, ancestors, descendants, and hierarchical variants that follow transitive relations like part-of and develops-from.
  • Ontology metadata and statistics: Look up ontology catalog information and OLS index stats to support downstream analysis or reporting.

Quick Start

Use the embl-ebi-ols skill to find the parent terms of a specific disease by asking the AI to get the OLS term details for DOID:5844 and return its parents.

Dependency Matrix

Required Modules

scienceskillscommon

Components

scriptsreferences

💻 Claude Code Installation

Recommended: Let Claude install automatically. Simply copy and paste the text below to Claude Code.

Please help me install this Skill:
Name: embl-ebi-ols
Download link: https://github.com/google-deepmind/science-skills/archive/main.zip#embl-ebi-ols

Please download this .zip file, extract it, and install it in the .claude/skills/ directory.
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