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scientific-ontology-enrichment

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Cross-ontology enrichment for biomedical insights.

Data & Analytics#ontology#bioinformatics#enrichment#ols#enrichr#efo#umls
Authornahisaho
Version1.0.0
Installs0

System Documentation

What problem does it solve?

This pipeline enables mapping biomedical experiment factors to standardized ontology terms and performing cross-ontology enrichment analyses by integrating EFO, OLS, Enrichr, and UMLS.

Core Features & Use Cases

  • Ontology mapping: map experimental factors to EFO terms and retrieve cross-ontology mappings via OLS and UMLS.
  • Gene-set enrichment: run enrichment analyses on gene lists with Enrichr across multiple libraries.
  • Cross-ontology search: perform cross-ontology queries across HP, MONDO, DOID, GO, CHEBI, and related resources.

Quick Start

Provide a gene list and run the integrated ontology enrichment pipeline to obtain ontology mappings and enrichment results.

Dependency Matrix

Required Modules

None required

Components

Standard package

💻 Claude Code Installation

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Please help me install this Skill:
Name: scientific-ontology-enrichment
Download link: https://github.com/nahisaho/satori/archive/main.zip#scientific-ontology-enrichment

Please download this .zip file, extract it, and install it in the .claude/skills/ directory.
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