Agent Skills by Hisaho Nakata
Showing 226 vetted skills indexed across 3 GitHub repositories.
nahisahoscientific-rcsb-pdb-search
Search the RCSB PDB by text query and retrieve structured metadata with ligand information.
nahisahoscientific-toxicology-env
Integrate CTD toxicology data to reveal chemical-gene-disease links and screening patterns.
nahisahoscientific-disease-research
Integrates GWAS Catalog, Orphanet, OMIM, HPO, DisGeNET for disease-genetic analysis.
nahisahoscientific-civic-evidence
Extracts LungResect surgical-site infection and postoperative data from EHRs and MINI2 datasets.
nahisahoscientific-paleobiology
Query the PBDB REST API for fossil occurrence, taxon, and diversity data.
nahisahoscientific-regulatory-science
Consolidate FDA, EMA, PMDA, and IP regulatory data into unified profiles.
nahisahoscientific-metabolic-atlas
Query Metabolic Atlas REST API for metabolic reactions, metabolites, and compartments.
nahisahoscientific-proteomics-mass-spectrometry
Automate LC-MS/MS proteomics data analysis from spectral preprocessing to differential expression.
nahisahoscientific-regulatory-genomics
Integrate RegulomeDB, ReMap, and 4DN data to score noncoding variants.
nahisahoscientific-academic-writing
Apply journal-format templates and section patterns to scientific manuscripts with Crossref citations.
nahisahoscientific-text-mining-nlp
Extract biomedical entities and relationships from scientific text into a literature knowledge graph.
nahisahoscientific-causal-ml
Estimate heterogeneous treatment effects with DoWhy, EconML, and Double ML.
nahisahoscientific-deep-chemistry
Predict molecular properties from molecular structures using deep learning.
nahisahoscientific-rrna-taxonomy
Classify rRNA amplicon sequences against SILVA/Greengenes2 references and MGnify taxonomy.
nahisahoscientific-encode-screen
Query ENCODE, SCREEN, and ChIP-Atlas APIs to map regulatory elements for a gene.
nahisahoscientific-infectious-disease
Integrates pathogen genomics and epidemiology data for outbreak analysis and molecular typing workflows.
nahisahoscientific-metabolomics
Analyze LC-MS/GC-MS/NMR metabolomics datasets with PLS-DA, VIP scoring, and pathway enrichment.
nahisahoscientific-bioinformatics
Coordinates multi-omics bioinformatics workflows including scRNA-seq, genome, PPI, and metabolomics analyses.
nahisahoscientific-quantum-computing
Design, simulate, and analyze quantum circuits across Qiskit, Cirq, PennyLane, and QuTiP.
nahisahoscientific-critical-review
Analyze scholarly manuscripts for structural, logical, and interpretive weaknesses and generate revision recommendations.
nahisahoscientific-reinforcement-learning
Automate reinforcement learning experiments with Stable-Baselines3, Gymnasium, and PufferLib.
nahisahoscientific-adaptive-experiments
Automates adaptive experimental planning and analysis for multi-armed bandit, SPRT, Bayesian dose-finding, and response-adaptive randomized trials.
nahisahoscientific-reproducible-reporting
Automate reproducible scientific report generation from code and data.
nahisahoscientific-network-analysis
Construct and analyze biological networks with NetworkX to reveal hubs and modular structure.