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scientific-metabolic-atlas

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Automates GEM queries with Metabolic Atlas.

Education & Research#bioinformatics#network-analysis#flux-balance-analysis#metabolic-atlas#human-gem#metabolic-model#pathway-visualization
Authornahisaho
Version1.0.0
Installs0

System Documentation

What problem does it solve?

Metabolic Atlas enables programmable access to Human-GEM data; this skill automates searching for metabolic reactions, metabolites and compartments, and integrates flux analysis and network visualization to streamline GEM workflows.

Core Features & Use Cases

  • Search metabolic reactions, metabolites and compartments using the Metabolic Atlas REST API.
  • Build and visualize metabolic networks and prepare data for flux balance analysis.
  • Use cases: explore pathway connectivity in tissue-specific GEMs, identify hub metabolites, and prepare inputs for COBRA workflows.

Quick Start

Query glycolysis in Metabolic Atlas to retrieve reactions and metabolites and generate a simple network.

Dependency Matrix

Required Modules

None required

Components

Standard package

💻 Claude Code Installation

Recommended: Let Claude install automatically. Simply copy and paste the text below to Claude Code.

Please help me install this Skill:
Name: scientific-metabolic-atlas
Download link: https://github.com/nahisaho/satori/archive/main.zip#scientific-metabolic-atlas

Please download this .zip file, extract it, and install it in the .claude/skills/ directory.
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