Query ENA data by accession and metadata via Portal and Browser APIs.
npx skills add https://github.com/dotruru/claudemd --skill ena-database-dotruru
Please help me install this Agent Skill. Skill: ena-database Source: https://github.com/dotruru/claudemd/tree/main/skills/ena-database Command: npx skills add https://github.com/dotruru/claudemd --skill ena-database-dotruru
Access to the European Nucleotide Archive (ENA) is essential for retrieving nucleotide sequences, raw reads, and genome assemblies in a structured, programmatic way. This Skill enables querying by accession and metadata through ENA APIs and FTP, consolidating data access for genomics and bioinformatics pipelines.
Query ENA records by accession to retrieve corresponding data via API or FTP to feed into a genomics pipeline.
High-intent search queries and answers about installing and using this skill.
Query ENA records by accession through the Portal API or Browser API to retrieve metadata, then fetch sequences via FTP or Aspera for genomics pipeline integration.
ENA Portal API supports XML, JSON, CSV, and TSV output formats, allowing you to retrieve studies, samples, and assemblies for bioinformatics workflows and pipeline integration.
Yes, ENA taxonomy services and cross-references allow searching and filtering records across studies, samples, and assemblies to retrieve linked genomics data for analytics workflows.
Yes, ENA supports bulk downloading FASTA and FASTQ files via FTP and Aspera transfer methods, enabling retrieval of raw reads by run or assemblies by organism for pipeline integration.
Programmatically access ENA data by querying accession and metadata through the Portal API, Browser API, and taxonomy services, consolidating structured data retrieval for genomics pipelines.
Filter ENA studies and samples by organism using taxonomy lookups and metadata queries via the Portal API to retrieve corresponding reads or assemblies for bioinformatics workflows.
sanand0Retrieve nucleotide sequences, FASTQ files, and genome assemblies from ENA via REST APIs.
ovachieverRetrieve nucleotide sequences and associated data from ENA via REST APIs.
biomaps-infraRetrieve nucleotide sequences, raw reads, and genome assemblies from ENA via REST APIs.
justinpbarnettExecute behavioral tests simulating user interactions across CLI, web, and API interfaces.
