esm2-sequence-scoring
CommunityESM2-based sequence scoring and embeddings.
Authorzongtingwei
Version1.0.0
Installs0
System Documentation
What problem does it solve?
Sequence-level scoring and embeddings for protein sequences, enabling rapid plausibility checks and representation learning without full structure prediction.
Core Features & Use Cases
- Compute pseudo-log-likelihood (PLL) scores for sequence plausibility.
- Generate per-sequence embeddings for clustering, similarity search, or downstream modeling.
- Support zero-shot variant effect insights and design screening in protein-design pipelines.
Quick Start
Run the ESM2 sequence-scoring workflow on a FASTA file to generate embeddings and PLL scores.
Dependency Matrix
Required Modules
None requiredComponents
Standard package💻 Claude Code Installation
Recommended: Let Claude install automatically. Simply copy and paste the text below to Claude Code.
Please help me install this Skill: Name: esm2-sequence-scoring Download link: https://github.com/zongtingwei/Bioclaw_Skills_Hub/archive/main.zip#esm2-sequence-scoring Please download this .zip file, extract it, and install it in the .claude/skills/ directory.
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