Submit FastFold fold jobs via the Jobs API and fetch CIF/PDB URLs.
npx skills add https://github.com/fastfold-ai/agent-skills --skill fastfold-fold-job
Please help me install this Agent Skill. Skill: fastfold-fold-job Source: https://github.com/fastfold-ai/agent-skills/tree/main/skills/fastfold-fold-job Command: npx skills add https://github.com/fastfold-ai/agent-skills --skill fastfold-fold-job
Submits and manages FastFold protein folding jobs via the Jobs API, handling authentication, job creation, polling for completion, and retrieval of CIF/PDB URLs, metrics, and viewer links.
Create a FastFold fold job for your protein sequence, wait for completion, and retrieve CIF/PDB URLs and the viewer link.
High-intent search queries and answers about installing and using this skill.
You can automate a protein folding job by using scripts to submit a sequence via the Jobs API, poll for completion, and fetch the resulting CIF and PDB URLs. This handles authentication, job creation, waiting, and retrieval in one workflow.
The best way to retrieve a 3D viewer link is to poll the Jobs API until the folding job completes, then fetch the viewer link from the returned results. The workflow provides the viewer URL alongside the CIF and PDB file URLs and metrics.
Yes, you can submit multiple protein sequences in a single fold job request. The workflow supports multi-sequence payloads with optional constraints and multiple models, allowing batch processing of protein folding jobs through the API.
Yes, you need a supported API key to submit a fold job. The workflow uses the API key for authentication when creating jobs, polling for completion, and fetching the resulting CIF and PDB URLs and metrics from the Jobs API.
The workflow supports fetching results in both CIF and PDB file formats. After the protein folding job completes, the API returns URLs for both formats, along with the job metrics and a 3D viewer link for quick inspection.
Polling for protein folding job completion relies on the Jobs API status updates. The bundled scripts and OpenAPI schema define the create, wait, and fetch steps, allowing you to monitor progress and handle completion or failure states during the automation workflow.
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