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fastquorum

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Run UMI consensus pipelines with confidence

Data & Analytics#bioinformatics#nf-core#nextflow#qc#umi#fastquorum#consensus reads
Authordanilomonge
Version1.0.0
Installs0

System Documentation

What problem does it solve?

This Skill removes the guesswork from running nf-core/fastquorum by guiding you through a validated, release-pinned workflow for turning sequencing reads into consensus results.

Core Features & Use Cases

  • Validated pipeline execution: Runs the correct nf-core/fastquorum release with the exact required inputs and parameters.
  • UMI and duplex sequencing support: Handles single UMI, multi-UMI, and duplex sequencing scenarios for consensus generation.
  • Reproducible outputs and provenance: Produces standardized results, pipeline metadata, and run provenance so analyses can be repeated and audited.
  • Use case: A bioinformatics analyst can submit a samplesheet and get consensus reads, QC summaries, and parameter-safe execution without manually checking the upstream documentation.

Quick Start

Ask the AI to run the fastquorum pipeline on your samplesheet with the desired output directory and profile, using the pinned release or a specific version if needed.

Dependency Matrix

Required Modules

None required

Components

Standard package

💻 Claude Code Installation

Recommended: Let Claude install automatically. Simply copy and paste the text below to Claude Code.

Please help me install this Skill:
Name: fastquorum
Download link: https://github.com/danilomonge/nf-claw/archive/main.zip#fastquorum

Please download this .zip file, extract it, and install it in the .claude/skills/ directory.
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