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gene-database

Query NCBI Gene records via E-utilities and Datasets API for annotations.

Updated Mar 10, 2026
Search Tags:#bioinformatics#genomics#gene annotation#ncbi#database query#gene
One-click install
npx skills add https://github.com/felixboehm/biochem-allergy --skill gene-database-felixboehm
Or copy as Structured Prompt for Agent▼
Please help me install this Agent Skill.
Skill: gene-database
Source: https://github.com/felixboehm/biochem-allergy/tree/main/.claude/skills/gene-database
Command: npx skills add https://github.com/felixboehm/biochem-allergy --skill gene-database-felixboehm

SYSTEM DOCUMENTATION & REQUIREMENTS

💡 This Skill includes scripts (resource) and references (resource) components.

What problem does it solve?

This Skill provides programmatic access to the NCBI Gene database, enabling users to search for genes, retrieve detailed information, and perform batch lookups efficiently.

Core Features & Use Cases

  • Gene Search: Find genes by symbol, ID, or biological context (e.g., disease, pathway).
  • Data Retrieval: Obtain comprehensive gene metadata, including sequences, locations, and annotations.
  • Batch Processing: Efficiently query multiple genes simultaneously to streamline analysis.
  • Use Case: Researchers can use this Skill to quickly gather information on a list of candidate genes for a specific disease, including their known functions, associated pathways, and relevant publications.

Quick Start

Use the gene-database skill to find the gene ID for 'BRCA1' in humans.

Frequently Asked Questions about gene-database

High-intent search queries and answers about installing and using this skill.

FAQPage Schema
How do I query the NCBI Gene database for gene annotation and functional analysis?▼

To query the NCBI Gene database for gene annotation, you can search by gene symbol or ID to retrieve metadata such as RefSeqs, GO terms, and genomic locations using E-utilities and Datasets API.

Can I retrieve RefSeqs and GO terms for a list of genes in batch?▼

Yes, batch lookups are supported for retrieving RefSeqs and GO terms. You can query multiple genes simultaneously to efficiently acquire comprehensive functional annotations and metadata.

What gene information can I get from searching the NCBI Gene database by symbol?▼

Searching the NCBI Gene database by symbol yields comprehensive gene metadata, including sequences, RefSeqs, GO terms, genomic locations, and associated publications for functional analysis.

Is there a way to find gene IDs for candidate genes associated with a specific disease?▼

Yes, you can find gene IDs for candidate genes associated with a disease by searching the NCBI Gene database using biological context terms like disease names or pathways.

Do I need to install external dependencies to perform a batch lookup of gene metadata?▼

No external dependencies are required. The Skill operates independently to query the NCBI Gene database via E-utilities and Datasets API for batch gene metadata retrieval.

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