gene-list-curator

To curate a literature-backed gene list, this Skill queries UniProt and NCBI Gene to identify candidates for a requested function, then normalizes them into a structured table with Gene name, Protein ID, Organism, and PMID references.

The normalized gene sets are output as a structured table or workbook containing fixed schema fields: Gene name, Protein ID, Organism, Functional class, Evidence or role, PMID, References, and Notes, with an optional UniProt accession.

Yes, you can generate a curated, publication-ready transcription factor list for Homo sapiens that includes gene names, protein identifiers, and literature references, exported as a structured CSV file.

Yes, this gene list curation tool applies to function-specific gene sets including chromatin regulators, receptor families, transcription factors, and methylation readers across organisms, merging data into a unified schema.

Yes, openpyxl is a required dependency to export the curated and normalized gene lists as a structured workbook, as the Skill relies on this library for workbook generation and formatting.

The best way to normalize gene aliases is to query NCBI Gene for alias data, merge them with high-confidence UniProt entries, and map them into a structured dataset with functional class, evidence, and reference fields.