generate-ingredient-umap
OfficialExplore CHEBI ingredients via interactive UMAP.
AuthorCultureBotAI
Version1.0.0
Installs0
System Documentation
What problem does it solve?
It turns CultureMech CHEBI ingredient embeddings into an explorable map so you can quickly understand ingredient relationships, frequency, and coverage gaps without manually sifting through raw graphs or embedding files.
Core Features & Use Cases
- Interactive UMAP visualization: Generates a browser-ready HTML scatter plot (
app/ingredient_umap.html) for 2D exploration of CHEBI ingredients. - Tiered, frequency-aware insights: Colors points by occurrence tier and sizes them by log-scale frequency to highlight the most important ingredients.
- Actionable tooltips and search: Shows ingredient name, CHEBI ID, CAS-RN (when available), occurrence count, and example media, with filtering by ingredient name or CHEBI ID.
Quick Start
Run the full visualization generation with the local embeddings by executing: just gen-ingredient-umap
Dependency Matrix
Required Modules
None requiredComponents
scripts
💻 Claude Code Installation
Recommended: Let Claude install automatically. Simply copy and paste the text below to Claude Code.
Please help me install this Skill: Name: generate-ingredient-umap Download link: https://github.com/CultureBotAI/CultureMech/archive/main.zip#generate-ingredient-umap Please download this .zip file, extract it, and install it in the .claude/skills/ directory.
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