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match-kg-microbe

Official

Link CultureMech media to KG-Microbe IDs.

Data & Analytics#knowledge graph#data enrichment#kg-microbe#chebi matching#ontology grounding#mediadive medium
AuthorCultureBotAI
Version1.0.0
Installs0

System Documentation

What problem does it solve?

CultureMech media recipes are hard to cross-reference with the KG-Microbe knowledge graph unless you can reliably assign the correct kg_microbe_match node ID for each recipe.

Core Features & Use Cases

  • Exact KG node identification: Matches each CultureMech record to the appropriate mediadive.medium:XXX KG-Microbe node using exact CHEBI ingredient set equality (concentrations ignored).
  • Traceability via kg_microbe_match: Populates the kg_microbe_match field with the matched node ID to enable downstream KG queries and validation against authoritative DSMZ-derived formulations.
  • Workflow flexibility: Supports full-repo batch matching, per-category enrichment, and single-recipe inspection for targeted debugging.

Quick Start

Run the KG matcher in dry-run mode across the repository to preview which media would be matched, then re-run the same command without the dry-run flag to write kg_microbe_match values.

Dependency Matrix

Required Modules

None required

Components

Standard package

đź’» Claude Code Installation

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Please help me install this Skill:
Name: match-kg-microbe
Download link: https://github.com/CultureBotAI/CultureMech/archive/main.zip#match-kg-microbe

Please download this .zip file, extract it, and install it in the .claude/skills/ directory.
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