geo-download-data
CommunityDownload GEO data and metadata for analysis.
AuthorMDhewei
Version1.0.0
Installs0
System Documentation
What problem does it solve?
Download GEO datasets and metadata from NCBI GEO to enable reproducible data acquisition for downstream analyses.
Core Features & Use Cases
- Downloads GEO series (GSE) and GEO datasets (GDS) accessions.
- Extracts expression matrices (expression_matrix.tsv), sample metadata (sample_metadata.tsv), and series information (series_info.json).
- Optional: download SOFT files for archival purposes and generate a manifest for provenance.
Quick Start
Run the GEO download script by providing an accession and an output directory, for example GSE12345 and data/geo_gse12345
Dependency Matrix
Required Modules
requestspandasnumpy
Components
scripts
💻 Claude Code Installation
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Please help me install this Skill: Name: geo-download-data Download link: https://github.com/MDhewei/bioinfor-claw/archive/main.zip#geo-download-data Please download this .zip file, extract it, and install it in the .claude/skills/ directory.
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