Query over 20 genomic databases for gene information and sequence analysis.
npx skills add https://github.com/sanand0/scientific-research --skill gget-sanand0
Please help me install this Agent Skill. Skill: gget Source: https://github.com/sanand0/scientific-research/tree/main/.claude/skills/gget Command: npx skills add https://github.com/sanand0/scientific-research --skill gget-sanand0
This Skill streamlines complex bioinformatics data retrieval and analysis, saving researchers significant time and effort in querying diverse genomic databases.
Use gget to search for human gene information related to 'GABA receptor'.
High-intent search queries and answers about installing and using this skill.
You can query genomic databases for gene information and protein sequences by using a unified command-line and Python interface that retrieves data directly from Ensembl, UniProt, and NCBI. This approach streamlines sequence analysis across over 20 databases.
Yes, you can predict protein 3D structure and retrieve sequences in the same workflow by integrating AlphaFold and RCSB PDB queries with sequence analysis methods. This unified toolkit fetches structural predictions alongside raw sequence data.
The best way to find disease associations from gene expression data is to query integrated databases like OpenTargets, cBioPortal, and COSMIC alongside single-cell expression data from CELLxGENE. This links expression patterns directly to disease lookups.
Yes, this bioinformatics toolkit supports single-cell gene expression querying by integrating directly with the CELLxGENE and ARCHS4 databases. You can retrieve specific expression profiles and perform enrichment analysis from the command line.
You can perform sequence alignment and BLAST searches by utilizing the built-in sequence analysis methods that interface with NCBI and Ensembl. This allows rapid sequence querying and alignment directly from your Python environment or terminal.
exon-researchRetrieve pathway members, cell-type markers, and genomic interval overlaps from biological databases.
Lord1EgyptReconstruct evolutionary relationships via sequence alignment, tree inference, and visualization.
CHENyiru3Visualize multi-modal spatial single-cell data in interactive browser dashboards.
Lord1EgyptPerform genomic interval arithmetic and stream BED, VCF, and BAM files with Polars.
