analytical-grounding
OfficialRetrieve biological and genetic information for in-depth analysis.
Data & Analytics#genomics#pathway analysis#cell type markers#genomic intervals#biological information
Authorexon-research
Version1.0.0
Installs0
System Documentation
What problem does it solve?
Analytical Grounding simplifies accessing and interpreting complex genetic and biological data by retrieving essential information such as pathway members, cell type markers, and genomic feature overlaps.
Core Features & Use Cases
- Retrieve Pathway Members: Extract member genes from defined pathways (Reactome, KEGG).
- Access Cell-Type Markers: Get marker-gene records for specified cell types.
- Feature Overlaps: Obtain genomic interval overlaps with declared annotation files.
- Use Case: If you are analyzing a gene set and need to understand its membership in a specific pathway, Analytical Grounding can provide that information quickly.
Quick Start
To retrieve the member genes of a Reactome pathway, use: pathway.retrieve_members --pathway_id_or_name R-HSA-70635
Dependency Matrix
Required Modules
genomic databasesGENCODEENCODEbiological databases
Components
scriptsreferencesassets
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Please help me install this Skill: Name: analytical-grounding Download link: https://github.com/exon-research/genomi/archive/main.zip#analytical-grounding Please download this .zip file, extract it, and install it in the .claude/skills/ directory.
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