Skills
.Work. You
Rest

giotto

Community

Spatial genomics toolkit for analysis & viz.

Data & Analytics#visualization#r#single-cell#giotto#spatial-analysis#spatial-genomics
AuthorCHENyiru3
Version1.0.0
Installs0

System Documentation

What problem does it solve?

Giotto provides a comprehensive R toolkit for spatial genomics, enabling end-to-end analysis across multiple platforms with advanced visualization and statistics.

Core Features & Use Cases

  • Multi-platform support (Visium, Slide-seq, MERFISH, seqFISH, Xenium) for spatial data processing and visualization.
  • Create, manage, and integrate Giotto objects with single-cell references for deconvolution and comparative analyses.
  • Spatial networks, spatial statistics, and rich, publication-ready visualizations to reveal spatial patterns.
  • Reproducible workflows and best-practice guidance for end-to-end spatial transcriptomics studies.
  • Use cases include analyzing tissue architecture, cell-type localization, and spatially informed differential expression.

Quick Start

Install Giotto and related tooling, then start analyzing a spatial dataset with Giotto.

Dependency Matrix

Required Modules

None required

Components

Standard package

💻 Claude Code Installation

Recommended: Let Claude install automatically. Simply copy and paste the text below to Claude Code.

Please help me install this Skill:
Name: giotto
Download link: https://github.com/CHENyiru3/AI-Skills-Collections/archive/main.zip#giotto

Please download this .zip file, extract it, and install it in the .claude/skills/ directory.
View Source Repository

Agent Skills Search Helper

Install a tiny helper to your Agent, search and equip skill from 471,000+ vetted skills library on demand.