gp-manifest

Generate GenePattern manifest files with specified parameters and dependencies.

1|4|Updated Sep 8, 2025
One-click install
npx skills add https://github.com/genepattern/module-toolkit --skill gp-manifest
Or copy as Structured Prompt for Agent
Please help me install this Agent Skill.
Skill: gp-manifest
Source: https://github.com/genepattern/module-toolkit/tree/main/skills/gp-manifest
Command: npx skills add https://github.com/genepattern/module-toolkit --skill gp-manifest

SYSTEM DOCUMENTATION & REQUIREMENTS

💡 This Skill requires python, and includes scripts (resource) components.

What problem does it solve?

This Skill automates the creation or regeneration of the GenePattern manifest file for GenePattern modules, significantly reducing the manual effort required for module setup.

Core Features & Use Cases

  • Manifest Generation: Automatically generates or regenerates the manifest file required for a GenePattern module.
  • Validation Feedback: Provides detailed guidance on parameter designs and manifest rules to ensure correct file structure.
  • Customization: Offers Python scripts for precise control over the manifest content, avoiding common errors in formatting and structure.
  • Use Case: When a GenePattern module requires a new manifest or needs to correct an existing one after validation issues, this Skill simplifies the process and ensures consistency.

Quick Start

Run the 'generate' command to create a new GenePattern manifest for your module.

Frequently Asked Questions about gp-manifest

High-intent search queries and answers about installing and using this skill.

FAQPage Schema
How do I automate GenePattern manifest generation for bioinformatics modules?

You can automate GenePattern manifest generation by running a Python script that specifies module parameters and dependencies, ensuring the correct manifest structure for deployment without manual formatting.

What is a GenePattern manifest file and when do I need to regenerate it?

A GenePattern manifest file defines the parameters and dependencies required for module deployment. You need to regenerate it when setting up a new module or correcting validation issues in an existing manifest structure.

Do I need a Python environment to create a GenePattern manifest?

Yes, you need a Python environment with specified dependencies and access to the module directory to run the scripts that automate the manifest file creation and ensure correct parameter specification.

How do I fix validation issues in a GenePattern module manifest?

To fix validation issues in a GenePattern module manifest, you can regenerate the file using provided Python scripts, which offer detailed guidance on parameter designs and enforce correct manifest rules and structure.

What's the best way to ensure correct parameter specification in a GenePattern manifest?

The best way to ensure correct parameter specification is to use Python scripts that provide precise control over manifest content, automatically validating parameter designs and avoiding common formatting errors.

Can I customize the manifest structure for my GenePattern module deployment?

Yes, you can customize the manifest structure for GenePattern module deployment using Python scripts that allow precise control over manifest content, avoiding common formatting and structural errors.