Detect overlaps between genomic intervals in BED data.
npx skills add https://github.com/jackspace/ClaudeSkillz --skill gtars
Please help me install this Agent Skill. Skill: gtars Source: https://github.com/jackspace/ClaudeSkillz/tree/main/skills/scientific-pkg-gtars Command: npx skills add https://github.com/jackspace/ClaudeSkillz --skill gtars
This Skill provides a high-performance Rust toolkit for genomic interval analysis with Python bindings, including overlap detection, coverage generation, tokenization for ML models, and reference sequence management.
High-intent search queries and answers about installing and using this skill.
Overlap detection in BED files identifies where genomic intervals intersect. gtars uses a high-performance Rust core to efficiently find overlapping features, returning overlap sets that reveal which intervals intersect across your dataset.
Yes. Genomic tokenization converts interval data into tokens suitable for ML workflows. gtars tokenizes BED intervals and reference sequences, enabling you to feed standardized genomic tokens directly into machine learning pipelines.
Coverage track generation computes read depth across intervals. gtars generates coverage tracks via uniwig output from BED input, converting interval data into continuous coverage representations for visualization and downstream analysis.
Yes. gtars supports standard genomic formats including BED, WIG, BigWig, FASTA, and fragment TSV. This format compatibility lets you integrate gtars into existing pipelines without converting your reference sequences or interval data.
IGD indexing creates queryable interval indexes. gtars builds IGD indexes from BED data, enabling rapid interval lookups and overlap detection—essential for large-scale genomic analyses and single-cell fragment processing.
Both. gtars provides Python bindings and a CLI interface to its Rust core, letting you call overlap detection, tokenization, and coverage generation either programmatically or as command-line tools.
robinbarvaagAnalyze genomic intervals in Rust with Python bindings for overlap detection and coverage tracks.
biomaps-infraAnalyze genomic intervals with Rust and Python bindings for overlap detection and coverage tracks.
dralkhAnalyze genomic interval data for overlaps, coverage, and sequence retrieval.
jackspaceDetect overlaps between genomic intervals in BED data.
