gtex-download-data

What problem does it solve?

GTEx data is dispersed across portals; this Skill centralizes acquisition of gene expression data (bulk RNA-seq TPMs, read counts, or median expression) into ready-to-analyze tissue×gene matrices.

Core Features & Use Cases

• Retrieve median TPM, sample TPM, read counts, tissue metadata, or gene-specific TPM across tissues.
• Filter by tissues and/or genes and save filtered matrices for downstream analyses.
• Use with or without an optional manifest to track provenance for reproducibility.

Quick Start

Run the GTEx data downloader to fetch median TPM, sample TPM, read counts, or tissue metadata for specified tissues and genes, saving results to TSV.