Retrieve GTEx median TPM values to validate ENCODE regulatory findings.
npx skills add https://github.com/ammawla/encode-toolkit --skill gtex-expression
Please help me install this Agent Skill. Skill: gtex-expression Source: https://github.com/ammawla/encode-toolkit/tree/main/plugin/skills/gtex-expression Command: npx skills add https://github.com/ammawla/encode-toolkit --skill gtex-expression
This Skill helps researchers integrate comprehensive GTEx tissue expression data to validate and interpret ENCODE regulatory elements and gene activity.
Query GTEx data for a gene's median expression across tissues and compare it with ENCODE tissue activity to validate regulatory associations.
High-intent search queries and answers about installing and using this skill.
To validate ENCODE regulatory elements with GTEx tissue gene expression data, retrieve median TPM values and tissue specificity metrics for candidate genes to confirm if nearby genes are actively expressed in corresponding tissues.
Tissue-specific gene regulation analysis correlates regulatory elements with gene expression levels across multiple tissues to verify if a gene is actively expressed in the tissue corresponding to its regulatory data.
Yes, you can verify if a gene like INS is highly expressed in pancreatic tissue by querying GTEx API endpoints for median TPM values to validate enhancer-target predictions and support functional hypotheses.
Retrieve median TPM values for candidate genes across multiple tissues by utilizing GTEx API endpoints, which provide the expression data needed to interpret tissue-specific gene activity and correlate it with regulatory findings.
Querying GTEx data with this Skill requires no specific dependencies or external libraries, as it directly utilizes GTEx API endpoints to retrieve expression values and tissue specificity metrics for genomic analysis.
A limitation of using GTEx tissue expression data for variant prioritization is that it validates associations based on median TPM values and tissue specificity metrics, which may not fully capture dynamic regulatory contexts or rare tissue states outside the GTEx dataset.
LeonChaoXRetrieve tissue-specific gene expression, eQTLs, and sQTLs from the GTEx Portal API.
sagunkayasthaQuery the GTEx REST API v2 for tissue-specific gene expression and eQTL data.
nahisahoExtract GTEx tissue-specific gene expression and eQTL data via REST API v2.
Yezez9Query the GTEx REST API v2 for tissue-specific gene expression, eQTLs, and sQTLs.
