gwas-database

To fetch SNP-trait associations and p-values from the GWAS Catalog, query by variant, trait, or gene using the REST API endpoints. This retrieves effect sizes and full study metadata for downstream genetic epidemiology workflows.

Yes, you can retrieve GWAS summary statistics for polygenic risk scoring. The Skill accesses the Summary Statistics API and full study metadata, supporting meta-analyses and variant annotation across genomic regions.

The best way to query EFO traits and rsIDs across studies is by targeting the REST API endpoints for associations, variants, and traits. Pagination and HAL-formatted responses handle large result sets for systemic reviews.

Yes, the GWAS Catalog API supports pagination for large association queries. It returns HAL-formatted responses, allowing you to systematically retrieve extensive SNP-trait association datasets and study metadata without data loss.

To get effect sizes and study metadata for variant annotation, query the GWAS Catalog associations endpoint with a specific rsID or trait. This centralizes scattered publication data into structured summary statistics for analysis.