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hlatyping

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Reproducible HLA typing from sequencing reads

Data & Analytics#bioinformatics#nf-core#nextflow#sequencing#samplesheet#hlatyping
Authordanilomonge
Version1.0.0
Installs0

System Documentation

What problem does it solve?

This Skill removes uncertainty from running the nf-core/hlatyping workflow by exposing the exact inputs, version-specific parameters, and execution details needed to launch HLA typing correctly.

Core Features & Use Cases

  • Samplesheet-driven runs for sequencing datasets, including DNA and RNA inputs.
  • Release-aware guidance for required parameters, allowed values, and pipeline version selection.
  • Reproducible execution with clear output locations and provenance-friendly runtime behavior.
  • Use case: process a cohort of patient sequencing samples and generate standardized HLA typing calls for downstream interpretation.

Quick Start

Ask the assistant to run hlatyping on your samplesheet, choose the desired Nextflow profile and output directory, and produce a provenance-backed HLA typing result.

Dependency Matrix

Required Modules

None required

Components

Standard package

💻 Claude Code Installation

Recommended: Let Claude install automatically. Simply copy and paste the text below to Claude Code.

Please help me install this Skill:
Name: hlatyping
Download link: https://github.com/danilomonge/nf-claw/archive/main.zip#hlatyping

Please download this .zip file, extract it, and install it in the .claude/skills/ directory.
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