Run the nf-core/hlatyping workflow on samplesheet-based DNA or RNA sequencing data.
npx skills add https://github.com/danilomonge/nf-claw --skill hlatyping
Please help me install this Agent Skill. Skill: hlatyping Source: https://github.com/danilomonge/nf-claw/tree/main/pipelines/hlatyping Command: npx skills add https://github.com/danilomonge/nf-claw --skill hlatyping
This Skill removes uncertainty from running the nf-core/hlatyping workflow by exposing the exact inputs, version-specific parameters, and execution details needed to launch HLA typing correctly.
Ask the assistant to run hlatyping on your samplesheet, choose the desired Nextflow profile and output directory, and produce a provenance-backed HLA typing result.
High-intent search queries and answers about installing and using this skill.
You can run HLA typing by providing a schema-checked samplesheet to the nf-core/hlatyping workflow, explicitly selecting Nextflow profiles, pipeline release versions, and validated output paths to ensure reproducible execution.
The nf-core hlatyping workflow produces HLA typing results from sequencing data. It supports samplesheet-driven DNA or RNA analysis, applying release-specific parameters to generate calls for downstream interpretation.
Yes, Nextflow profiles must be selected explicitly when launching the HLA typing workflow. This controls runtime execution, manages provenance capture, and ensures reproducible behavior across different computing environments.
Yes, a release-specific pipeline version must be explicitly selected when running the HLA typing workflow. This enforces release-aware parameter validation and ensures reproducible execution of the sequencing analysis.
Yes, the hlatyping workflow supports both DNA and RNA sequencing inputs through samplesheet-driven analysis. It requires validated input paths and schema-checked parameters to process patient cohorts and generate HLA typing calls.
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