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hmdb-database

Search human metabolites by name, ID, or spectral data.

Updated May 10, 2026
Search Tags:#metabolomics#mass spectrometry#spectroscopy#biochemistry#biomarker#metabolite#human metabolites
One-click install
npx skills add https://github.com/Imad-Oute/ResearchForge --skill hmdb-database-imad-oute
Or copy as Structured Prompt for Agent▼
Please help me install this Agent Skill.
Skill: hmdb-database
Source: https://github.com/Imad-Oute/ResearchForge/tree/main/OpenSource-Projects/claude-scientific-skills/scientific-skills/hmdb-database
Command: npx skills add https://github.com/Imad-Oute/ResearchForge --skill hmdb-database-imad-oute

SYSTEM DOCUMENTATION & REQUIREMENTS

What problem does it solve?

This Skill provides detailed information about human metabolites, enabling researchers to identify and analyze small molecules in biological samples efficiently.

Core Features & Use Cases

  • Metabolite Search: Quickly look up metabolites by name, ID, structure, or spectral data to facilitate metabolomics studies.
  • Data Retrieval: Access chemical, biological, pathway, disease, and spectroscopic information relevant to human metabolites.
  • Use Case: A researcher detects a metabolite via mass spectrometry and uses this Skill to identify its chemical properties, associated pathways, and potential biomarkers.

Quick Start

Use the hmdb-database skill to search for the metabolite with HMDB ID HMDB000001 or by name "glucose" to retrieve detailed chemical and biological data.

Frequently Asked Questions about hmdb-database

High-intent search queries and answers about installing and using this skill.

FAQPage Schema
How do I identify human metabolites using mass spectrometry data?▼

You can look up human metabolites by name, HMDB ID, chemical structure, or spectral data to retrieve comprehensive chemical properties, biological context, and pathways. This supports metabolomics research and biomarker discovery from biological samples.

What biological and chemical data can I retrieve for human metabolites?▼

You can retrieve chemical properties, biological context, pathway associations, disease links, and spectroscopic information for human metabolites. This comprehensive data supports metabolite identification and biomarker discovery in metabolomics studies.

Can I search for human metabolites by HMDB ID like HMDB000001?▼

Yes, you can search for human metabolites directly using HMDB IDs like HMDB000001 or by name such as "glucose". This retrieves detailed chemical properties, biological context, and associated pathways for metabolomics research.

Does this tool provide spectral data for metabolite identification in metabolomics?▼

Yes, this tool provides spectroscopic and spectral data for human metabolites. Researchers can use this spectral information to identify small molecules detected in biological samples during mass spectrometry and biomarker discovery studies.

What's the best way to find disease-associated biomarkers among human metabolites?▼

To find disease-associated biomarkers, retrieve biological context and disease associations for human metabolites using name or ID searches. This structured data exploration supports biomarker discovery and metabolomics research in biological samples.

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