Search HMDB for human metabolite data by name, ID, or structure.
npx skills add https://github.com/swaruplab/operon --skill hmdb-database-swaruplab
Please help me install this Agent Skill. Skill: hmdb-database Source: https://github.com/swaruplab/operon/tree/main/src-tauri/protocols/hmdb-database Command: npx skills add https://github.com/swaruplab/operon --skill hmdb-database-swaruplab
HMDB provides comprehensive, centralized data on human metabolites. This Skill allows researchers to quickly locate metabolite information, retrieve properties, spectra, pathways, and clinical context from HMDB for analysis and reporting.
Query HMDB for a metabolite like "Caffeine" by name to fetch its HMDB entry, including structure, properties, and related pathways.
High-intent search queries and answers about installing and using this skill.
Retrieve human metabolite data by providing a chemical structure input such as SMILES or InChI to search HMDB entries. This returns comprehensive metabolite information including chemical properties, pathways, and associated diseases for metabolomics workflows.
Find disease biomarker associations and clinical context by searching HMDB for specific metabolites. The database provides comprehensive clinical chemistry data linking metabolites to associated diseases and biomarker applications within systems biology workflows.
HMDB metabolite entries include spectral data and cross-references with external databases. Searching by name, HMDB ID, or structure returns these alongside chemical properties and pathway information for metabolite identification and annotation.
Access metabolite pathways and enzyme information by querying HMDB for specific metabolites. The database returns pathway associations and enzyme data within metabolite entries, supporting systems biology and metabolomics pathway analysis workflows.
This Skill supports metabolomics workflows for compound identification and annotation by retrieving comprehensive HMDB metabolite data. Query by name, ID, or structure to obtain properties, spectra, and cross-references needed for accurate metabolite annotation.
HMDB metabolite data access includes clear notes on HMDB version and licensing restrictions. The Skill provides comprehensive metabolite information while transparently indicating database version and licensing terms for proper data usage in research workflows.
pur3v4d3rQuery HMDB by name, ID, or SMILES/InChI to retrieve chemical, biological, spectral data and cross-links.
MicrockQuery HMDB to identify metabolites via text, structure, and spectral matching.
SciMate-AISearch HMDB metabolite data by name, ID, or structure.
rubenslivRetrieve HMDB metabolite properties, spectra, and disease associations from XML/CSV datasets.
