imagej-fiji-macro
CommunityStreamline bioimage analysis with ImageJ/Fiji macros.
Authorpradyumnasagar
Version1.0.0
Installs0
System Documentation
What problem does it solve?
This Skill addresses the complexities of bioimage analysis by providing a streamlined approach to recording, writing, and running ImageJ/Fiji macros for batch processing, ROI handling, and intensity measurement.
Core Features & Use Cases
- Batch Processing: Apply the same analysis to multiple images with a single macro.
- ROI Handling: Draw, import, transfer, and measure regions of interest across images.
- Intensity Measurement: Perform mean, integrated, and max intensity measurements over ROIs or entire images.
- Colocalization: Conduct colocalization analysis on two-channel images.
- Use Case: For a study on cellular dynamics, use this Skill to automate the measurement of intensity in regions of interest across a series of time-lapse images.
Quick Start
Run the macro 'colocalization_macro.ijm' on the 'time-lapse-stack.tif' to measure colocalization between two channels.
Dependency Matrix
Required Modules
ijfijicoloc-2trackmate
Components
scriptsreferences
💻 Claude Code Installation
Recommended: Let Claude install automatically. Simply copy and paste the text below to Claude Code.
Please help me install this Skill: Name: imagej-fiji-macro Download link: https://github.com/pradyumnasagar/open-research-skills/archive/main.zip#imagej-fiji-macro Please download this .zip file, extract it, and install it in the .claude/skills/ directory.
Agent Skills Search Helper
Install a tiny helper to your Agent, search and equip skill from 620,000+ vetted skills library on demand.