Skills
.Work. You
Rest

ipg

Community

Document and run the IPG pipeline confidently.

Education & Research#documentation#pipeline#nf-core#nextflow#ipg#cryptic-peptides#immunopeptidogenomics
Authorsanjaysgk
Version1.0.0
Installs0

System Documentation

What problem does it solve?

The ipg skill helps AI agents interact with the IPG documentation site to install, run, debug, cite, and extend the sanjaysgk/ipg nf-core pipeline.

Core Features & Use Cases

  • Install Nextflow and a container engine and pull the IPG pipeline for quick starts.
  • Look up parameters, channels, and outputs across the six nf-core subworkflows to plan runs and troubleshoot issues.
  • Cite the founding Scull et al. paper and manage per-tool attributions to ensure reproducibility in proteogenomics workflows.
  • Extend the pipeline with new subworkflows or variants and document any changes within the IPG docs.

Quick Start

Start with Get started → Quickstart to run a test profile and view the cryptic FASTA output.

Dependency Matrix

Required Modules

None required

Components

Standard package

💻 Claude Code Installation

Recommended: Let Claude install automatically. Simply copy and paste the text below to Claude Code.

Please help me install this Skill:
Name: ipg
Download link: https://github.com/sanjaysgk/ipg-docs/archive/main.zip#ipg

Please download this .zip file, extract it, and install it in the .claude/skills/ directory.
View Source Repository

Agent Skills Search Helper

Install a tiny helper to your Agent, search and equip skill from 510,000+ vetted skills library on demand.