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kbase-query

Official

Query KBase BERDL Datalake via MCP REST.

Data & Analytics#rest#mcp#sql#query#datalake#berdl#kbase
Authoropenscientist-io
Version1.0.0
Installs0

System Documentation

What problem does it solve?

Enables researchers and data scientists to programmatically access and interrogate the KBase BERDL Datalake via MCP REST API, turning raw dataset indices into actionable insights.

Core Features & Use Cases

  • Discover and explore available databases and tables in the KBase BERDL Datalake.
  • Retrieve table schemas, sample data, and execute SQL-like queries against the lake.
  • Use cases include data discovery for bioinformatics workflows, reproducible data retrieval, and rapid prototyping of data-driven hypotheses.

Quick Start

Ask it to list databases, then list tables for a database, and optionally run a query against a table.

Dependency Matrix

Required Modules

curljq

Components

scriptsreferences

💻 Claude Code Installation

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Please help me install this Skill:
Name: kbase-query
Download link: https://github.com/openscientist-io/openscientist/archive/main.zip#kbase-query

Please download this .zip file, extract it, and install it in the .claude/skills/ directory.
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