Manage biological data artifacts with versioning and lineage tracking.
npx skills add https://github.com/swaruplab/operon --skill lamindb-swaruplab
Please help me install this Agent Skill. Skill: lamindb Source: https://github.com/swaruplab/operon/tree/main/src-tauri/protocols/lamindb Command: npx skills add https://github.com/swaruplab/operon --skill lamindb-swaruplab
LaminDB provides an integrated platform to manage biological data artifacts, track data provenance, and enforce reproducible workflows across local and cloud environments.
Track an analysis by creating an artifact, linking its transform, and querying by features for reproducible results.
High-intent search queries and answers about installing and using this skill.
Manage biological data with lineage by creating versioned artifacts and linking them to their transforms and runs. This tracks data provenance end-to-end, making analysis reproducible and queryable by features.
Ontology-backed metadata standardizes biological data management by using Bionty to annotate artifacts with controlled vocabularies. This enforces consistent metadata across studies, enabling accurate querying and cross-project collaboration.
Yes, you can integrate data lineage tracking with Nextflow and Snakemake pipelines. The platform provides workflow integrations that automatically capture transform records and artifact versions during pipeline execution.
Yes, LaminDB supports flexible deployment across local and cloud infrastructures. This data lakehouse-style organization facilitates seamless storage, retrieval, and cross-project collaboration without infrastructure lock-in.
Organize a spatial data lakehouse by using artifact versioning with keys and ontology-backed metadata records. This approach structures spatial transcriptomics workflows while maintaining auditability and standardized annotation.
Use artifact versioning over standard file storage to maintain strict auditability and data provenance. By linking features and transforms to versioned artifacts, you enforce reproducible biological workflows that standard file storage cannot track.
qinyan-aiManage biological data artifacts with provenance tracking and ontology annotation.
jackspaceAnalyze biological sequences for microbiome and ecological data interpretation.
LogauaEngstromAutomate biological dataset management and lineage tracking with LaminDB artifacts, runs, and transforms.
jaechang-hitsManage, version, and trace biological data artifacts with ontology validation.
