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nipype

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Plan safer multi-tool neuroimaging workflows.

Education & Research#data flow#workflow orchestration#neuroimaging#pipeline planning#nipype#interface routing#q c checks
AuthorMarvinCui
Version1.0.0
Installs0

System Documentation

What problem does it solve?

Nipype helps you design and reason about complex neuroimaging pipelines that connect multiple external tools without immediately executing heavy processing.

Core Features & Use Cases

  • Workflow orchestration planning: outline how nodes, interfaces, and data flow through a multi-step neuroimaging workflow.
  • Interface discovery & routing: determine which Nipype concepts (e.g., interfaces, workflows, node graphs) match a user question.
  • Safety-first execution guidance: provide cautions and checks to avoid unsafe assumptions (inputs/space/modalities/outputs) before running anything.
  • Use case: a user has AFNI preprocessing outputs and FreeSurfer recon outputs and asks how to connect them into a reproducible pipeline; this skill guides the planning of the workflow structure and what to verify first.

Quick Start

Ask the AI to “plan a Nipype workflow to connect these neuroimaging steps and tell me what to verify before running any interface execution.”

Dependency Matrix

Required Modules

None required

Components

references

💻 Claude Code Installation

Recommended: Let Claude install automatically. Simply copy and paste the text below to Claude Code.

Please help me install this Skill:
Name: nipype
Download link: https://github.com/MarvinCui/NeuroForge/archive/main.zip#nipype

Please download this .zip file, extract it, and install it in the .claude/skills/ directory.
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