normal-tissue-expression-for-gene
CommunityQuick GTEx gene expression for a single gene.
AuthorMDhewei
Version1.0.0
Installs0
System Documentation
What problem does it solve?
Retrieve and summarize normal tissue expression for a single human gene using GTEx, including full tissue-level expression, publication-quality barplot output, and a simple expression-pattern classification such as universally expressed, tissue-specific, mixed, or non-expressed.
Core Features & Use Cases
- Retrieve GTEx median tissue expression for a single gene and present tissue-level data in a sortable table.
- Classify expression pattern into universally-expressed, tissue-specific, mixed, non-expressed, or no-data, with a simple interpretation.
- Generate publication-quality visualizations (barplots) and produce publication-ready outputs (PNG/PDF, TSV, summary text).
- Output deterministic artifacts including: tissue expression table, summary text, summary TSV, and plots for easy downstream reporting.
Quick Start
Run the GTEx single-gene expression workflow by executing python scripts/normal_tissue_expression_for_gene.py --gene "<GENE>" --outdir <OUTPUT_DIR>.
Dependency Matrix
Required Modules
numpymatplotlibpandasrequests
Components
scripts
💻 Claude Code Installation
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Please help me install this Skill: Name: normal-tissue-expression-for-gene Download link: https://github.com/MDhewei/bioinfor-claw/archive/main.zip#normal-tissue-expression-for-gene Please download this .zip file, extract it, and install it in the .claude/skills/ directory.
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