omicverse-visualization-for-bulk-color-systems-and-single-cell-d

To plot single-cell embeddings and density overlays consistently, use OmicVerse plotting functions with Forbidden City palettes. This skill automates applying ov.pl helpers and defensive checks for embeddings and cluster columns to ensure unified aesthetics across figures.

Generate volcano plots and Venn diagrams for bulk data by applying OmicVerse visualization workflows. This skill provides step-by-step plotting routines and a unified color system to streamline figure generation across bulk and single-cell analyses.

Yes, you can use Forbidden City color palettes for both bulk and single-cell visualizations. The skill automates color management with these palettes to ensure consistent aesthetics across projects, applying them to dotplots, convex hulls, and stacked bar charts.

OmicVerse plotting requires loading datasets with ov.read and setting up the environment with ov_plot_set before generating figures. This skill validates inputs and performs defensive checks for embeddings and cluster columns during the visualization workflow.

Single-cell embedding plots fail when embeddings or cluster columns are missing or invalid. This skill performs defensive checks on these inputs before applying ov.pl plotting functions, ensuring data integrity before figure generation.

Customize gene-density visuals and cell-type proportions in single-cell plots using OmicVerse embedding enhancements. This skill automates generating density overlays, polygonal region highlights, and stacked bar charts with consistent Forbidden City palettes.