openalex-cross-thread-synthesis

Decomposes problems into sub-threads, retrieves OpenAlex papers, synthesizes and persists to MongoDB.

Updated Mar 29, 2026
One-click install
npx skills add https://github.com/gokuno1/research-agent-mcp --skill openalex-cross-thread-synthesis
Or copy as Structured Prompt for Agent
Please help me install this Agent Skill.
Skill: openalex-cross-thread-synthesis
Source: https://github.com/gokuno1/research-agent-mcp/tree/main/.cursor/skills/openalex-cross-thread-synthesis
Command: npx skills add https://github.com/gokuno1/research-agent-mcp --skill openalex-cross-thread-synthesis

SYSTEM DOCUMENTATION & REQUIREMENTS

What problem does it solve?

Decomposes a complex research problem into structured sub-problems, enabling coordinated cross-thread analysis across multiple subfields within the same domain.

Core Features & Use Cases

  • Decomposition and thread assignment: breaks problems into 2–8 sub-problems and maps each to a dedicated research thread.
  • Per-thread retrieval and claims extraction: retrieves high-impact papers via OpenAlex MCP and extracts atomic claims with evidence.
  • Compatibility analysis and integration blueprint: performs pairwise and global compatibility checks and constructs an integration blueprint.
  • Cross-thread hypotheses and scoring: generates falsifiable cross-thread hypotheses and a composite scoring rubric.
  • Persistence to MongoDB: stores completed synthesis runs in research_agent.synthesis_runs.

Quick Start

Provide a multi-subfield research problem and the skill will decompose it into threads, retrieve OpenAlex papers for each thread, analyze cross-thread compatibility, generate an integration blueprint, and persist the results to MongoDB.

Frequently Asked Questions about openalex-cross-thread-synthesis

High-intent search queries and answers about installing and using this skill.

FAQPage Schema
How do I synthesize cross-thread research claims from multiple subfields?

To synthesize cross-thread research claims, this skill decomposes a domain problem into 2–8 sub-problems, retrieves high-impact papers per thread via OpenAlex MCP, extracts claims with evidence, and constructs an integration blueprint.

What is the best way to analyze compatibility between different research threads?

Analyzing research thread compatibility involves performing pairwise and global compatibility checks on extracted per-thread claims, then generating falsifiable cross-thread hypotheses with a composite scoring rubric.

How do I retrieve high-impact papers and extract atomic claims for a complex research problem?

You can retrieve high-impact papers and extract atomic claims by mapping decomposed sub-problems to dedicated research threads, using OpenAlex MCP to fetch relevant literature per thread, and isolating claims with supporting evidence.

Does this cross-thread synthesis approach require MongoDB to store integration blueprints?

Yes, this cross-thread synthesis approach requires MongoDB to persist completed synthesis runs, storing the final integration blueprints, cross-thread hypotheses, and compatibility scores directly in the research_agent.synthesis_runs collection.

Can I generate falsifiable hypotheses across multiple research subfields using OpenAlex?

Yes, you can generate falsifiable cross-thread hypotheses using OpenAlex by retrieving high-impact papers for each decomposed subfield thread, analyzing pairwise compatibility, and scoring the resulting integration blueprint.

When should I use cross-thread synthesis for multi-subfield research instead of single-thread retrieval?

Use cross-thread synthesis for multi-subfield research when a complex problem requires coordinated analysis across 2–8 sub-problems, whereas single-thread retrieval only suits isolated literature searches without integration blueprints.