opentrons-integration

Automate creation and testing of Opentrons Protocol API v2 workflows for Flex and OT-2 robots.

18|1|Updated Dec 27, 2025
One-click install
npx skills add https://github.com/LogauaEngstrom/claude-scientific-skills --skill opentrons-integration-logauaengstrom
Or copy as Structured Prompt for Agent
Please help me install this Agent Skill.
Skill: opentrons-integration
Source: https://github.com/LogauaEngstrom/claude-scientific-skills/tree/main/scientific-skills/opentrons-integration
Command: npx skills add https://github.com/LogauaEngstrom/claude-scientific-skills --skill opentrons-integration-logauaengstrom

SYSTEM DOCUMENTATION & REQUIREMENTS

💡 This Skill requires opentrons, and includes scripts (resource) and references (resource) components.

What problem does it solve?

Opentrons integration provides ready-to-use templates, API references, and example protocols to accelerate building and running workflows on Opentrons Flex and OT-2.

Core Features & Use Cases

  • Prebuilt templates for PCR setup, serial dilution, and basic transfers.
  • Module loading (temperature, magnetic, heater-shaker, thermocycler) and labware management.
  • Reference scripts and API docs to guide development and testing.

Quick Start

Open the basic protocol template and adapt it to your labware and robot setup.

Frequently Asked Questions about opentrons-integration

High-intent search queries and answers about installing and using this skill.

FAQPage Schema
How do I automate PCR setup and serial dilution on an Opentrons robot?

Automate PCR setup and serial dilution on an Opentrons robot by adapting prebuilt protocol templates for your specific labware. These templates integrate with the Opentrons Protocol API v2 to streamline workflow creation on Flex and OT-2 robots.

What is the Opentrons Protocol API v2 used for in lab automation?

The Opentrons Protocol API v2 is used for lab automation to script protocols, control modules like thermocyclers and heater-shakers, and manage labware. It provides the framework for defining liquids and executing basic transfers on Flex and OT-2 robots.

Does the Opentrons API support temperature modules and heater-shakers?

Yes, the Opentrons API supports loading and controlling temperature, magnetic, heater-shaker, and thermocycler modules. You can integrate these modules into your protocol scripts to manage complex labware workflows on Flex and OT-2 robots.

How do I start writing an Opentrons protocol script for basic transfers?

Start writing an Opentrons protocol script by opening the provided basic transfer template. Adapt this template to define your labware, load instruments, and reference the included API documentation to guide development and testing for your robot setup.

Can I use Opentrons templates for both Flex and OT-2 robots?

Yes, you can use Opentrons templates for both Flex and OT-2 robots. The templates are designed to work with the Protocol API v2, allowing you to specify your robot setup and load the appropriate instruments and labware for either platform.

What are the limitations of using prebuilt Opentrons protocol templates?

Prebuilt Opentrons protocol templates are limited to specific workflows like PCR setup, serial dilution, and basic transfers. Complex custom protocols require manual scripting using the Protocol API v2 references, as templates only provide a starting structure.