Load and preprocess whole-slide images for computational pathology workflows.
npx skills add https://github.com/felixboehm/biochem-allergy --skill pathml-felixboehm
Please help me install this Agent Skill. Skill: pathml Source: https://github.com/felixboehm/biochem-allergy/tree/main/.claude/skills/pathml Command: npx skills add https://github.com/felixboehm/biochem-allergy --skill pathml-felixboehm
This Skill streamlines complex computational pathology workflows, enabling advanced analysis of whole-slide images and multiplexed data without requiring deep expertise in each sub-domain.
Use the pathml skill to load a whole-slide image and perform stain normalization.
High-intent search queries and answers about installing and using this skill.
You can load whole-slide images across 160+ formats and apply preprocessing techniques like stain normalization and tissue segmentation to prepare slides for downstream machine learning analysis.
Spatial graph construction in multiplex imaging builds cell and tissue graphs from segmented images, enabling spatial analysis of interactions within the tumor microenvironment using data from platforms like CODEX and Vectra.
Yes, pathology workflows support PyTorch integration for machine learning model training and ONNX for model deployment, streamlining the transition from nucleus segmentation to inference.
Cell segmentation and marker expression quantification in multiplex immunofluorescence images are performed by analyzing CODEX, Vectra, and MERFISH data to annotate cell types and study tumor microenvironment interactions.
No deep expertise in each sub-domain is required, as comprehensive pathology toolkits streamline complex workflows for whole-slide images and multiplexed data, handling loading, preprocessing, and segmentation automatically.
jackspaceAnalyze whole-slide pathology images and multiparametric imaging data for computational pathology workflows.
robotlearning123Load whole-slide images, preprocess, and construct spatial graphs for pathology.
sanand0Processes whole-slide pathology images with machine learning and spatial analysis.
ovachieverExtract nuclei and cellular features from whole-slide pathology images.
