pharmgkb-clinpgx

Query ClinPGx and CPIC for pharmacogenomics data with auto-detected input types.

130|4|Updated Mar 13, 2026
One-click install
npx skills add https://github.com/QSong-github/DrugClaw --skill pharmgkb-clinpgx
Or copy as Structured Prompt for Agent
Please help me install this Agent Skill.
Skill: pharmgkb-clinpgx
Source: https://github.com/QSong-github/DrugClaw/tree/main/skills/pharmacogenomics/pharmgkb
Command: npx skills add https://github.com/QSong-github/DrugClaw --skill pharmgkb-clinpgx

SYSTEM DOCUMENTATION & REQUIREMENTS

What problem does it solve?

Pharmacogenomics knowledge retrieval to connect gene, drug, and variant data with CPIC guidelines, delivering evidence-backed PGx relationships and cross-references for clinicians and researchers.

Core Features & Use Cases

  • Auto-detects input type (gene symbol, ClinPGx accession PA####, rsID, or drug name) and returns genes, chemicals, variants, CPIC pairs, and related entities.
  • Provides CPIC pair data and cross-referenced PGx knowledge to support pharmacogenomics research, drug labeling decisions, and clinical decision support.
  • Suitable for PGx data curation, literature triage, and decision-support tooling in pharmacogenomics workflows.

Quick Start

Query ClinPGx with a gene symbol or drug name to retrieve PGx evidence immediately.

Frequently Asked Questions about pharmgkb-clinpgx

High-intent search queries and answers about installing and using this skill.

FAQPage Schema
How do I retrieve pharmacogenomics data using a gene symbol or drug name?

To retrieve pharmacogenomics data, query ClinPGx and CPIC with a gene symbol or drug name. The system auto-detects the input pattern and returns associated genes, chemicals, variants, and CPIC guideline pairs.

Can I look up CPIC guidelines using a ClinPGx accession or rsID?

Yes, you can look up CPIC guidelines using a ClinPGx PA#### accession or an rsID. The tool auto-detects these input patterns to fetch cross-referenced pharmacogenomics variants, chemicals, and related entities.

What is the best way to batch query pharmacogenomics relationships for multiple drugs?

Batch querying pharmacogenomics relationships is supported natively. You can submit multiple drug names or gene symbols simultaneously to retrieve structured CPIC pairs, variants, and cross-referenced PGx evidence in bulk.

Does this pharmacogenomics tool provide structured data for clinical decision support?

Yes, this pharmacogenomics tool provides structured result fields and summarization utilities suitable for clinical decision support. It delivers evidence-backed PGx relationships connecting genes, drugs, and variants with CPIC guidelines.

When do I need to query ClinPGx and CPIC for pharmacogenomics data?

You need to query ClinPGx and CPIC when curating PGx data, triaging literature, or building decision-support tooling. It connects gene, drug, and variant data with CPIC guidelines for pharmacogenomics research and drug labeling.

Are there limitations to the pharmacogenomics data returned from ClinPGx and CPIC?

The pharmacogenomics data is limited to the entities and relationships indexed by ClinPGx and CPIC. It returns genes, chemicals, variants, and pairs available through their REST APIs without independent literature validation.