phee-query

Search PHEE pharmacovigilance data by drug, effect, or free text.

130|4|Updated Mar 13, 2026
One-click install
npx skills add https://github.com/QSong-github/DrugClaw --skill phee-query
Or copy as Structured Prompt for Agent
Please help me install this Agent Skill.
Skill: phee-query
Source: https://github.com/QSong-github/DrugClaw/tree/main/skills/drug_nlp/phee
Command: npx skills add https://github.com/QSong-github/DrugClaw --skill phee-query

SYSTEM DOCUMENTATION & REQUIREMENTS

What problem does it solve?

This skill enables quick access to pharmacovigilance event data by allowing users to search for drug names, effects, or free text within the PHEE dataset.

Core Features & Use Cases

  • Search by drug name, adverse event, or free text across PHEE records (single-entity and batch queries).
  • Retrieve and inspect matching events with relevant fields (drug, effect, event_type, sentence) and supporting metadata.
  • Use in research workflows to find examples of drug–event associations and generate structured outputs for analyses.

Quick Start

Query PHEE records by drug name or adverse event to retrieve matching events.

Frequently Asked Questions about phee-query

High-intent search queries and answers about installing and using this skill.

FAQPage Schema
How do I search pharmacovigilance event data for specific drug names or adverse effects?

You can search pharmacovigilance event data by querying specific drug names, adverse events, or free text across the PHEE dataset to retrieve matching records with relevant metadata. This allows you to quickly find annotated adverse drug events and drug-effect associations.

What is the best way to batch query drug-effect associations from a pharmacovigilance dataset?

Batch querying drug-effect associations from a pharmacovigilance dataset is supported through batch search utilities that process multiple lookups and output structured JSON. This enables efficient retrieval of annotated adverse drug event examples across the PHEE records.

Can I load pharmacovigilance event datasets from CSV or TSV files?

Yes, you can load pharmacovigilance event datasets from CSV or TSV files, as well as JSON and JSON-lines formats. The load functionality supports these formats to ingest annotated adverse drug event data for subsequent search and analysis.

How does retrieving annotated adverse drug events from the PHEE dataset work?

Retrieving annotated adverse drug events from the PHEE dataset works by matching your query against annotated records to return relevant fields including drug, effect, event_type, and sentence. This provides supporting literature examples for drug-event associations.

Does the PHEE dataset search support free text queries for adverse drug event literature examples?

Yes, the PHEE dataset search supports free text queries to find literature examples of adverse drug events. You can retrieve matching events with supporting metadata and generate structured outputs for research analysis workflows.