Build phylogenetic trees from FASTA sequences using MAFFT, IQ-TREE 2, and ETE3.
npx skills add https://github.com/dralkh/seerai --skill phylogenetics-dralkh
Please help me install this Agent Skill. Skill: phylogenetics Source: https://github.com/dralkh/seerai/tree/main/skills/phylogenetics Command: npx skills add https://github.com/dralkh/seerai --skill phylogenetics-dralkh
It removes the manual complexity of turning raw biological sequences into reliable evolutionary trees, helping researchers move from FASTA files to interpretable phylogenies with less guesswork.
Ask the assistant to take my FASTA file, align it with MAFFT, infer a phylogenetic tree with IQ-TREE 2, and render the rooted tree with ETE3.
High-intent search queries and answers about installing and using this skill.
To build a phylogenetic tree from a FASTA file, you first align sequences with MAFFT, infer the tree using IQ-TREE 2 or FastTree, and then render it with ETE3. This automates the entire workflow from raw sequences to an interpretable rooted phylogeny.
The best way to perform multiple sequence alignment for phylogenetic analysis is using MAFFT. It handles nucleotide or protein datasets of varying sizes, providing the accurately aligned sequences required for reliable downstream tree inference.
Yes, IQ-TREE 2 supports model selection and bootstrapping for molecular evolution studies. It performs tree inference and support assessment, including outgroup or midpoint rooting, to ensure accurate evolutionary relationships.
Yes, you can use ETE3 to visualize and prune phylogenetic trees. It enables rendering trees, computing basic statistics, pruning clades, and inspecting common ancestors for comprehensive evolutionary analysis.
To infer viral outbreak phylogenies from raw genomic sequences, align the data with MAFFT, infer the tree using FastTree or IQ-TREE 2, and analyze the rooted phylogeny with ETE3 for viral phylodynamics and molecular clock studies.
RamanEbrahimiAutomate sequence alignment, maximum likelihood tree inference, and tree visualization with MAFFT, IQ-TREE 2, FastTree, and ETE3.
Yezez9Align biological sequences with MAFFT and infer evolutionary trees using IQ-TREE 2 or FastTree.
Estrella-231Infer maximum-likelihood phylogenetic trees from unaligned FASTA sequences.
biomaps-infraBuild and analyze phylogenetic trees using MAFFT, IQ-TREE 2, and FastTree.
