Construct and analyze phylogenetic trees from sequence data using MAFFT, IQ-TREE 2, FastTree, and ETE3.
npx skills add https://github.com/mkurman/tamux --skill phylogetics
Please help me install this Agent Skill. Skill: phylogetics Source: https://github.com/mkurman/tamux/tree/main/skills/scientific-skills/phylogenetics Command: npx skills add https://github.com/mkurman/tamux --skill phylogetics
Reconstruct evolutionary relationships and analyze sequence data by building and interpreting phylogenetic trees.
Run the phylogenetic pipeline on your unaligned sequences to generate a rooted, visualizable tree.
High-intent search queries and answers about installing and using this skill.
You can construct a phylogenetic tree by running this pipeline on unaligned sequences; it handles MAFFT alignment, IQ-TREE 2 inference, and ETE3 visualization automatically to produce a rooted, visualizable tree.
The best way to trace viral outbreak lineages is through phylogenetic tree construction, which infers evolutionary relationships from sequence data and supports viral phylodynamics and molecular clock studies.
Yes, this phylogenetic pipeline supports large datasets by utilizing FastTree, which is specifically included alongside IQ-TREE 2 for efficient maximum likelihood tree inference on extensive sequence collections.
Yes, you must install MAFFT and IQ-TREE 2 as dependencies before constructing evolutionary trees; installation instructions for these required tools are included in the skill description.
You can visualize a phylogenetic tree after maximum likelihood inference using the ETE3 Python library and FigTree, which are integrated into the pipeline to render and interpret the inferred evolutionary relationships.
Yes, you can use this pipeline for protein family analysis and dating divergence events, as it supports molecular clock studies and comparing gene families through phylogenetic tree construction.
pur3v4d3rAnalyze biological sequences and phylogenetic data with scikit-bio.
nahisahoAutomate phylogenetic analysis workflows from sequence alignments to publication-ready trees.
zongtingweiAlign sequences, infer phylogenetic trees with IQ-TREE, and generate annotated visualizations.
ActiveInferenceInstituteFit Bayesian models to geospatial data with MCMC, HMC, VI, SMC, and ABC.
