scientific-phylogenetics
CommunityEnd-to-end phylogenetics workflows.
Data & Analytics#phylogenetics#pd#evolutionary-analysis#unifrac#tree-construction#divergence-time#ancestral-reconstruction
Authornahisaho
Version1.0.0
Installs0
System Documentation
What problem does it solve?
Molecular phylogenetics often requires integrating tree-building, dating, and diversity analyses into a reproducible pipeline. This skill provides an end-to-end workflow leveraging the ETE Toolkit and scikit-bio to build and visualize trees, estimate divergence times, and quantify phylogenetic diversity, enabling researchers to derive evolutionary insights efficiently.
Core Features & Use Cases
- Tree construction and visualization from aligned sequences using NJ/ML methods with ETE Toolkit and scikit-bio.
- Divergence-time estimation with molecular clocks and calibration data, plus PD/UniFrac analyses for ecological studies.
- Ancestral sequence reconstruction and comparative phylogenetics for lineage evolution and trait mapping.
Quick Start
Run the phylogenetics pipeline on your aligned sequences to generate a tree and a circular or rectangular visualization.
Dependency Matrix
Required Modules
None requiredComponents
Standard package💻 Claude Code Installation
Recommended: Let Claude install automatically. Simply copy and paste the text below to Claude Code.
Please help me install this Skill: Name: scientific-phylogenetics Download link: https://github.com/nahisaho/satori/archive/main.zip#scientific-phylogenetics Please download this .zip file, extract it, and install it in the .claude/skills/ directory.
Agent Skills Search Helper
Install a tiny helper to your Agent, search and equip skill from 471,000+ vetted skills library on demand.