pipeio-guide
CommunityPipeio ontology reference for flows and MCP.
Authorarashshahidi1997
Version1.0.0
Installs0
System Documentation
What problem does it solve?
Pipeio-guide provides a structured reference for the pipeio ontology, outlining flow and mod hierarchy, directory layout, configuration conventions, notebook workspaces, mod docs, and MCP tools to streamline pipeline authoring and discovery.
Core Features & Use Cases
- Ontology guidance: explains how flows, mods, and rules are organized and discoverable.
- Documentation facets: theory, spec, and delta docs per mod to improve maintainability.
- MCP tooling integration: enumerates available MCP server tools for flow inspection, editing, and validation.
- Use Case: a team defines a Snakemake flow, creates mods, writes docs, and uses MCP tools to audit and publish.
Quick Start
Initialize a workspace for a new flow and start exploring mods with MCP tools.
Dependency Matrix
Required Modules
None requiredComponents
Standard package💻 Claude Code Installation
Recommended: Let Claude install automatically. Simply copy and paste the text below to Claude Code.
Please help me install this Skill: Name: pipeio-guide Download link: https://github.com/arashshahidi1997/projio/archive/main.zip#pipeio-guide Please download this .zip file, extract it, and install it in the .claude/skills/ directory.
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