Agent Skills by arashshahidi1997
Showing 21 vetted skills indexed across 1 GitHub repositories.
arashshahidi1997figio-guide
Coordinate reproducible figure construction and validation for scientific workflows.
arashshahidi1997projio-setup
Configure and repair projio project environments via projio sync.
arashshahidi1997pipeio-flow-create
Scaffold a new pipeline flow with config, Snakefile, and datalad subdataset.
arashshahidi1997codelib-discovery
Identify existing code implementations and prior decisions relevant to a topic across internal and public sources, summarizing results in a structured note with queries, hits, gaps, and recommendations.
arashshahidi1997questio-ground
Assemble literature, code, and project details into a grounding brief.
arashshahidi1997questio-iterate
Coordinate iterative analysis workflows with human-in-the-loop feedback to refine milestones.
arashshahidi1997questio-record
Capture structured research evidence and mid-loop observations in repeatable workflows.
arashshahidi1997questio-next
Rank unblocked research tasks by dependency depth and evidence gaps.
arashshahidi1997pipeio-nb-extract
Extract notebook outputs into a flow-local markdown report with figures and metrics.
arashshahidi1997literature-discovery
Search a papers corpus to identify relevant methods and parameters.
arashshahidi1997idea-capture
Extract ideas into structured idea notes with title and template sections.
arashshahidi1997marimo-session
Create Marimo notebook sessions for real-time agent-human collaboration.
arashshahidi1997pipeio-guide
Provide structured access to pipeio pipeline metadata and authoring workflows.
arashshahidi1997questio-report
Aggregate milestones, results, blockers, and next steps into structured progress reports.
arashshahidi1997mcp-tool-scaffold
Scaffold an end-to-end MCP tool across subsystem code, wrappers, and documentation.
arashshahidi1997questio-investigate
Guide end-to-end pipeline anomaly investigations using questio and MCP tooling.
arashshahidi1997biblio-batch-curate
Ingest DOIs and PDFs to compile an indexed bibliography.
arashshahidi1997questio-session
Orchestrate end-to-end Questio research sessions using MCP tools.
arashshahidi1997rag-query
Query the project's RAG index across code, docs, or papers using MCP tools.
arashshahidi1997literature-presentation
Scaffold literature context into iterative presentation decks with presentio tools.
arashshahidi1997progress-report-deck
Assemble cross-project progress decks from worklog data using presentio tooling.