pipeio-nb-extract

Extract notebook outputs into a flow-local markdown report with figures and metrics.

1|Updated Mar 9, 2026
One-click install
npx skills add https://github.com/arashshahidi1997/projio --skill pipeio-nb-extract
Or copy as Structured Prompt for Agent
Please help me install this Agent Skill.
Skill: pipeio-nb-extract
Source: https://github.com/arashshahidi1997/projio/tree/main/docs/prompts/skills/pipeio-nb-extract
Command: npx skills add https://github.com/arashshahidi1997/projio --skill pipeio-nb-extract

SYSTEM DOCUMENTATION & REQUIREMENTS

What problem does it solve?

This skill extracts findings from an executed notebook and writes a curated flow-local report that includes figures, metrics, and interpretation.

Core Features & Use Cases

  • Extract notebook outputs: narrative markdown, generated figures, and printed metrics.
  • Support both percent-format notebooks and Marimo exports, then store the resulting report under the flow's docs/reports path.
  • Use cases include summarizing notebook findings for collaborators, meeting notes, or manuscript preparation.

Quick Start

Run pipeio_nb_extract(flow, name) to generate a flow-local report from an executed notebook.

Frequently Asked Questions about pipeio-nb-extract

High-intent search queries and answers about installing and using this skill.

FAQPage Schema
How do I extract notebook results into a formatted report with figures and metrics?

Extract notebook results by running pipeio_nb_extract on an executed notebook. It reads narrative markdown, generated figures, and printed metrics, then writes a standardized markdown report saved under the flow's docs/reports directory.

Can I generate markdown reports from both percent-format and Marimo notebooks?

Yes, report generation supports both percent-format notebooks and Marimo exports. The skill processes executed notebook outputs from either format and compiles them into a standardized markdown report within the flow-local docs path.

Do I need to run notebook execution before extracting findings into a flow report?

Yes, you must execute exploratory notebooks first using pipeio_nb_exec. The extraction skill reads outputs from the executed notebook and requires a valid flow and notebook name to compile the final report.

What's the best way to summarize notebook findings for collaborators or manuscript preparation?

Compile notebook findings into a flow-local report containing figures, metrics, and interpretation. The standardized markdown output is stored under the flow's docs/reports directory, making it directly accessible for meetings or manuscript preparation.

Does the notebook report extraction support overwrite or tags-only output modes?

Yes, the extraction skill handles optional overwrite and tags_only modes with clear instructions. These modes control how the standardized markdown report and figures are saved under the specified flow's docs/reports directory.

Where are extracted notebook figures and metrics stored after generating a flow report?

Extracted figures and metrics are saved as a standardized markdown report under the flow's docs/reports directory. Specifically, generated figures are stored in the {flow}/docs/reports/{name}/ subdirectory for collaboration.