Retrieve sequencing orders and plasmid sequences from the Plasmidsaurus API.
npx skills add https://github.com/farnunglab/benchaid --skill plasmidsaurus
Please help me install this Agent Skill. Skill: plasmidsaurus Source: https://github.com/farnunglab/benchaid/tree/main/skills/plasmidsaurus Command: npx skills add https://github.com/farnunglab/benchaid --skill plasmidsaurus
This skill enables scientists to fetch sequencing orders and plasmid sequences from the Plasmidsaurus API, streamlining data access for order management and sequence retrieval.
Run the plasmidsaurus_cli.py script with the desired subcommand to list orders, view order details, or download results.
High-intent search queries and answers about installing and using this skill.
You can retrieve sequencing orders and plasmid sequences by running the Python CLI script, which queries the Plasmidsaurus API to list orders, check statuses, and download results. It requires setting specific environment variables for authentication.
To download Plasmidsaurus sequencing data, you must set the PLASMIDSAURUS_CLIENT_ID and PLASMIDSAURUS_CLIENT_SECRET environment variables in your shell. The Python script reads these credentials to authenticate API requests.
Yes, you can filter sequencing orders and export results as JSON. The script supports filtering for order listing and outputs data in JSON format, enabling streamlined integration for order management and sequence retrieval workflows.
Automating sequencing reads retrieval is best handled by running the Python CLI script to download results directly from the Plasmidsaurus API. This streamlines data access for offline analysis and archival storage without manual intervention.
Fetching plasmid sequences with this script requires no external dependencies. It operates independently using a standalone Python script, relying solely on standard environment variables for authentication to retrieve sequencing data.
ticruz38Authenticate Google accounts for AI agents to access Gmail, Calendar, Drive, and Sheets.
dralkhRead, write, and query indexed genomic alignment, variant, and sequence files.
ovachieverRetrieve nucleotide sequences and associated data from ENA via REST APIs.
JosephWoodallQuery Reactome REST APIs to retrieve pathway data and map genes.
