Search PrimeKG knowledge graph for genes, drugs, diseases, and phenotypes.
npx skills add https://github.com/Hung-3008/agusta --skill primekg-hung-3008
Please help me install this Agent Skill. Skill: primekg Source: https://github.com/Hung-3008/agusta/tree/main/.agents/skills/primekg Command: npx skills add https://github.com/Hung-3008/agusta --skill primekg-hung-3008
PrimeKG is a precision medicine knowledge graph that integrates data from over 20 primary databases and high-quality literature into a single resource, enabling researchers to search for nodes, retrieve direct neighbors, and analyze disease context.
Query a disease by name to retrieve its context and related genes, drugs, and phenotypes.
High-intent search queries and answers about installing and using this skill.
You can query a knowledge graph by disease name using Python scripts to retrieve related genes, drugs, and phenotypes. This requires a local PrimeKG CSV data file to search nodes and analyze local disease context.
Multiscale biological data retrieval searches an integrated knowledge graph containing genes, drugs, diseases, and phenotypes from over 20 databases. It enables searching nodes, retrieving direct neighbors with evidence, and identifying drug-disease paths for repurposing.
Yes, you can identify drug-disease paths for repurposing by analyzing local disease context within the knowledge graph. The Skill retrieves direct neighbors with evidence, supporting network pharmacology workflows and target identification.
Yes, a local PrimeKG CSV data file is required to search for genes and phenotypes. The Skill uses Python scripts and pandas to query this local file for node searches, neighbor retrieval, and disease-context analysis.
Using pandas limits you to searching a local CSV data file rather than a live graph database. It performs search and neighbor retrieval suitable for knowledge-based drug discovery but may face scale constraints with very large graph traversals.
You retrieve direct neighbors with evidence by executing Python scripts against a local PrimeKG CSV file. These scripts search the knowledge graph to extract connected genes, drugs, and phenotypes, providing the evidentiary context needed for network pharmacology workflows.
dralkhQuery PrimeKG CSV data to retrieve biomedical entities and relationships.
shushuznSearch biomedical entities and extract neighbor associations from the PrimeKG knowledge graph.
Zeyuyang-0420Query PrimeKG for genes, drugs, diseases, and phenotypes.
yf8578Query PrimeKG to retrieve genes, drugs, diseases, and phenotypes.
